⇲ Results
🆔 Job ID: 9eb4da84
🧬 Sequence: GGGGGUGUAGCUCAGUGGUAGAGCGCGUGCUUAGCAUGUACGAGGUCCCGGGUUCAAUCCCCGGCACCUCCA
🔎 Length: 72
🔧 Algorithm: RNAfold,Linearfold,MXfold2,Contextfold,Contrafold,Eternafold,SPOT-RNA,Ufold
🕛 Submission Time: 2024-07-11 06:23:39
🕐 Completion Time: 2024-07-11 06:26:07
Resubmission| Algorithm | Dot-Bracket | Free Energy(kcal/mol) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Triofold | ( | ( | ( | ( | ( | ( | ( | . | . | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | . | ( | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | . | . | . | . | . | ( | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | . | -29.90 |
| RNAfold | ( | ( | ( | ( | ( | ( | ( | . | . | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ( | ( | ( | ( | ( | ( | . | . | . | ) | ) | ) | ) | ) | ) | . | . | . | . | . | . | . | . | ( | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | . | -30.10 |
| Linearfold | . | . | . | . | . | . | . | . | . | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | ( | ( | ( | ( | ( | . | ( | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | . | ) | ) | ) | ) | ) | . | . | -22.00 |
| MXfold2 | ( | ( | ( | ( | ( | ( | ( | . | . | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | . | ( | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | . | . | . | . | . | ( | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | . | -29.90 |
| Contextfold | ( | ( | ( | ( | ( | ( | ( | . | . | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | . | ( | ( | ( | ( | ( | . | . | . | ) | ) | ) | ) | ) | . | . | . | . | . | . | . | . | . | ( | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | . | -28.40 |
| Contrafold | ( | . | . | ( | ( | ( | ( | ( | . | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | ) | ) | . | . | ) | ) | . | . | . | . | . | . | . | . | . | . | ( | ( | ( | ( | ( | . | ( | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | . | ) | ) | ) | ) | ) | ) | . | -17.70 |
| Eternafold | ( | ( | ( | ( | ( | ( | ( | . | . | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | . | ( | ( | ( | ( | ( | ( | . | ) | . | . | . | . | ) | ) | ) | ) | ) | . | . | . | . | . | ( | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | . | *99970.30 |
| SPOT-RNA | ( | ( | ( | ( | ( | ( | ( | ( | . | ( | ( | ( | ( | . | ( | . | ( | ( | . | ) | ) | ) | ) | ) | ( | ( | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | ) | . | . | . | ) | ( | ( | ( | ( | ( | ( | ) | ) | . | ) | . | . | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | . | *200003.20 |
| Ufold | ( | ( | ( | ( | ( | ( | ( | . | . | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | . | ( | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | . | . | . | . | . | ( | ( | ( | ( | ( | . | . | . | . | . | . | . | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | ) | . | -29.90 |
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Note: In darker regions, the predictions at those positions are highly similar. Conversely, lighter regions indicate greater dissimilarity.
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⤍ Structure 1 🟢
⤍ Structure 2 🔴
⇲ Dissimilarity Analysis
⇲ Motif Annotation
| Number | Type | Start | Start Sequence | End | End Sequence |
|---|---|---|---|---|---|
| 1 | Stem | 10-13 | GCUC | 21-24 | GAGC |
| 2 | Stem | 26-30 | CGUGC | 38-42 | GUACG |
| 3 | Stem | 48-52 | CCGGG | 60-64 | CCCGG |
| 4 | Hairpin loop | 13 | C | 21 | G |
| 5 | Hairpin loop | 30 | C | 38 | G |
| 6 | Hairpin loop | 52 | G | 60 | C |
⇲ Rfam Annotation
| Accession | RF00005 |
|---|---|
| CLAN | CL00001 |
| Score | 63.0 |
| E-value | 1.7e-14 |
| Description | tRNA |
| Reference | RF00005 |
Rfam Representitive structure
⇲ RNAcentral search